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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33713248_33713590_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33713248 - 33713590
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCC
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAGCAA
U12 Branch Point Sequence:
TCTGCTGCCACT
Flanking Amino Acid:
IQSRSLHMISVQAQRRNREH
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
69.6
35.5
Major BPS
45
-0.3
1.2
49.8
35.1
Major PPT
90
0.9
0.6
85
22.5
Minor 5ss
43.9
-0.7
2.3
54.4
42.7
Minor BPS
40.9
-0.6
2.5
62.98
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021162
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047162
33712088 - 33715293
3206