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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33722625_33723840_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33722625 - 33723840
Intron Length:
1216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGTACTA
5'SS Class:
major
3'SS Sequence:
TGTTGCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAA
U12 Branch Point Sequence:
AAAACCCAAACC
Flanking Amino Acid:
VKRNQENISSVLYKEGLGIG
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.2
55.8
43.1
Major BPS
53.6
0.09
1
59.9
32.5
Major PPT
68.8
0.42
1
62
39.1
Minor 5ss
34.7
-1.7
3.5
48.3
47.3
Minor BPS
46.6
-0.2
2
56.98
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029124
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047035
33719719 - 33723918
4200
ENSAPLT00000038621
33719508 - 33723918
4411
ENSAPLT00000025784
33721745 - 33728115
6371