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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33749439_33749966_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33749439 - 33749966
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
AACTTTGGAATA
Flanking Amino Acid:
AEKNKVLYSGCKYKEIFEKT
Intron Amino Acid Position:
1575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
88.7
0.87
0.7
81.3
36.4
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
43.5
-0.5
1.9
50.62
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007227
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007684
33741306 - 33771692
30387