Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33750072_33750188_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33750072 - 33750188

Intron Length:

117

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTGAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTTCTAAAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAC

U12 Branch Point Sequence:

TCTTTTCTAAAG

Flanking Amino Acid:

HRAVTDAISDVKYKEDLSWL

Intron Amino Acid Position:

1540

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

75.8

28.9

Major BPS

74.2

0.6

39.4

Major PPT

80.2

0.68

0.9

82.2

27.1

Minor 5ss

37.5

-1.4

2.8

46.1

42.2

Minor BPS

50.7

-0.1

1.8

60.47

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007227

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007684

33741306 - 33771692

30387