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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33750294_33750618_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33750294 - 33750618
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTACGTATA
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCTTTGAAG
Flanking Amino Acid:
HRKVTDDISSVKYKENYMSQ
Intron Amino Acid Position:
1505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
71.2
40.6
Major BPS
100
1.24
0.5
100
0
Major PPT
78.7
0.64
1
79.9
31.7
Minor 5ss
40.2
-1.1
3.1
51.4
45.2
Minor BPS
70.8
0.51
1.4
75.57
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007227
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007684
33741306 - 33771692
30387