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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33752886_33753089_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33752886 - 33753089
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
ATCTTCCTAAGT
Flanking Amino Acid:
VRARQLRKLWSNYIYTDTAK
Intron Amino Acid Position:
1328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.6
33.2
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
90.1
0.9
0.7
88.2
28.6
Minor 5ss
43.4
-0.7
3.2
57.2
46.9
Minor BPS
53.9
0.2
2
74.35
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007227
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007684
33741306 - 33771692
30387