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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33753497_33753583_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33753497 - 33753583
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTGTC
5'SS Class:
major
3'SS Sequence:
CTTTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
CTATTTTTACTT
Flanking Amino Acid:
VKATQEAVSDLIYKSDFFRM
Intron Amino Acid Position:
1260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
74.3
34.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87.2
0.84
0.7
84.6
30.3
Minor 5ss
45.8
-0.4
3.1
65.2
39.7
Minor BPS
57.3
0.31
1.6
71.31
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007227
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007684
33741306 - 33771692
30387