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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33756303_33756789_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33756303 - 33756789
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AGCTCTTGAATT
Flanking Amino Acid:
AKHAYDLRSDIKYKSKAEKM
Intron Amino Acid Position:
1082

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.8
41
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
89.7
0.89
0.6
85.1
22.4
Minor 5ss
34.8
-1.7
3.1
45.9
42.4
Minor BPS
61.6
0.44
1.4
71.8
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007227
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007684
33741306 - 33771692
30387