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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33759779_33759869_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33759779 - 33759869
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTCTC
5'SS Class:
major
3'SS Sequence:
TATCTTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
GTCTTCCTATCT
Flanking Amino Acid:
AVQSGINASDVKYKEDYHKT
Intron Amino Acid Position:
872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.3
36.2
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
79.3
0.66
0.8
74.5
30.3
Minor 5ss
35.8
-1.6
3.1
49.2
40.2
Minor BPS
51.4
0.12
2
72.9
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007227
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007684
33741306 - 33771692
30387