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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33763870_33764560_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33763870 - 33764560
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTATGTATT
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTGGAATTAATA
Flanking Amino Acid:
AKINSVNQSDLKYKETFNLE
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
85.6
30.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88
0.85
0.6
84.5
23.3
Minor 5ss
50.8
0.03
2.5
73.1
36.3
Minor BPS
47.9
-0.1
1.9
58.21
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007227
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007684
33741306 - 33771692
30387