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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33765282_33766176_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33765282 - 33766176
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACTA
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTTACATATTT
Flanking Amino Acid:
AKHSSDVQSELKYKADYVKQ
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
73.6
37
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.1
0.57
0.8
74.1
29.5
Minor 5ss
35.6
-1.6
3.2
48.3
47.2
Minor BPS
50.4
0.09
2
76.61
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007227
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007684
33741306 - 33771692
30387