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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33766285_33766482_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33766285 - 33766482
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCTCCTCACTT
Flanking Amino Acid:
AREAARILNQNLYKESWEKE
Intron Amino Acid Position:
417

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
85.4
31.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
80.8
0.69
0.8
76.1
32.3
Minor 5ss
37.6
-1.4
3.6
57.9
46.7
Minor BPS
60.9
0.42
1.9
79.83
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007227
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007684
33741306 - 33771692
30387