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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33767232_33767491_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33767232 - 33767491
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
TTCTCTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCTCTTGTACA
Flanking Amino Acid:
VKYAGDLLSERKYRTKAETL
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.4
0.75
0.8
79.3
32.7
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
57.8
0.24
1.8
71.8
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007227
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007684
33741306 - 33771692
30387