About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33767597_33767896_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33767597 - 33767896
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAT
U12 Branch Point Sequence:
TTGTGACTAACA
Flanking Amino Acid:
ARKAYDLQSDAIYKSDLEWL
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.4
25.8
Major BPS
70
0.5
1
59.6
38.6
Major PPT
87.2
0.84
0.8
80.5
37
Minor 5ss
36.5
-1.5
2.9
44.6
43.6
Minor BPS
48.3
-0.1
2.3
69.32
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007227
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007684
33741306 - 33771692
30387