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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33831487_33832426_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33831487 - 33832426
Intron Length:
940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TGACTTTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GACTTCTGACTT
Flanking Amino Acid:
SWNTYYTNTEFVIVVVDSTD
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.4
40.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
70.5
0.46
1.1
71.3
38.4
Minor 5ss
34.3
-1.8
2.8
40.4
45.5
Minor BPS
48.2
-0
1.7
62.09
42.2

Associated Gene:

Gene:
ARL5A
Ensembl Gene ID:
ENSAPLG00000022181
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033961
33825670 - 33836426
10757