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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33842032_33843259_F

Intron Information:

Intron Rank:
148465
Intron Class:
major
Intron Phase:
Intron Coordinates:
33842032 - 33843259
Intron Length:
1228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTATCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAAAAT
U12 Branch Point Sequence:
TGTTCTTCTATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
52.8
0.07
1.3
61.7
41.5
Major PPT
83.1
0.75
0.8
77.5
30
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
52.5
0.06
1.8
67.37
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029932
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039602
33839739 - 33844211
4473