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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33847460_33850026_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
33847460 - 33850026
Intron Length:
2567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTGACACTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GATTCTTTGACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.9
36.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
69.9
0.45
0.9
63.3
38.3
Minor 5ss
50.2
0.01
2.5
68.8
42.2
Minor BPS
74.5
0.77
1.1
76.07
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009361
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036189
33846735 - 33888445
41711