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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33850080_33851455_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33850080 - 33851455
Intron Length:
1376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAC
U12 Branch Point Sequence:
GCTCCATTTACT
Flanking Amino Acid:
PYPAAISGLQGKLTLKMKIT
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
66.4
0.41
1
59
37.6
Major PPT
69.8
0.45
0.9
69.3
35.8
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
52.6
0.16
2
72.09
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009361
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036189
33846735 - 33888445
41711