About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33856602_33859891_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33856602 - 33859891
Intron Length:
3290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GGTTCTTAAACT
Flanking Amino Acid:
IVHVKVSSPKVLQRLIKSRG
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
83.2
0.75
0.8
82.7
27.4
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
67.6
0.63
1.7
81.37
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009361
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037274
33847199 - 33911417
64219
ENSAPLT00000036189
33846735 - 33888445
41711
ENSAPLT00000009790
33847199 - 33910984
63786