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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33860044_33862408_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33860044 - 33862408
Intron Length:
2365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTTTTCCCATTT
Flanking Amino Acid:
IERSNTRSSLAEVQSEIERI
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
74
38.4
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
91.4
0.93
0.6
84.4
30.5
Minor 5ss
34.1
-1.8
3.2
46.7
48.6
Minor BPS
48.6
-0
2.1
76.5
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009361
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037274
33847199 - 33911417
64219
ENSAPLT00000036189
33846735 - 33888445
41711
ENSAPLT00000009790
33847199 - 33910984
63786