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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33862519_33865180_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33862519 - 33865180
Intron Length:
2662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTACCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
CTGTTCTTACCC
Flanking Amino Acid:
FDFLKHRFDGRISITRVTAD
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
74.2
0.55
0.8
67
34.4
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
62.6
0.37
1.7
69.13
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009361
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037274
33847199 - 33911417
64219
ENSAPLT00000036189
33846735 - 33888445
41711
ENSAPLT00000009790
33847199 - 33910984
63786