Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33865240_33867085_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

33865240 - 33867085

Intron Length:

1846

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTATT

5'SS Class:

strong_major

3'SS Sequence:

TCACCTCTGCAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTTCAA

U12 Branch Point Sequence:

TTTTCCTCACCT

Flanking Amino Acid:

LVGPSLKGYEVTDMMQKALF

Intron Amino Acid Position:

216

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.1

0.94

0.9

90.9

28.7

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

56.8

0.15

1.1

56.2

38.9

Minor 5ss

40.3

-1.1

3.2

59.2

45.4

Minor BPS

71.8

0.76

1.8

92.41

36.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009361

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036189

33846735 - 33888445

41711

ENSAPLT00000009790

33847199 - 33910984

63786

ENSAPLT00000037274

33847199 - 33911417

64219