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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33867167_33867275_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33867167 - 33867275
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
GTTTGGTTAACG
Flanking Amino Acid:
TSTAKQKQKVTEHVPPYDVV
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
87.8
0.85
0.6
81.5
30.6
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
52.2
-0
2.5
67.9
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009361
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036189
33846735 - 33888445
41711
ENSAPLT00000027557
33862477 - 33888445
25969
ENSAPLT00000009790
33847199 - 33910984
63786
ENSAPLT00000037274
33847199 - 33911417
64219