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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33869844_33871771_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33869844 - 33871771
Intron Length:
1928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTGATCTGAAGC
Flanking Amino Acid:
DAKDFLHIKEKYNNDWWIGR
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.7
37.5
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
80.9
0.7
0.9
72.5
42.4
Minor 5ss
31.6
-2.1
3.1
40.3
45.3
Minor BPS
50.5
-0
1.8
63.44
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009361
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037274
33847199 - 33911417
64219
ENSAPLT00000036189
33846735 - 33888445
41711
ENSAPLT00000027557
33862477 - 33888445
25969
ENSAPLT00000009790
33847199 - 33910984
63786