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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3388797_3389007_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3388797 - 3389007
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAG
U12 Branch Point Sequence:
CTGCTCCCAGCC
Flanking Amino Acid:
LNVVFIVLEIGRVTKTKDGH
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
1
70.9
39.9
Major BPS
44.5
-0.3
1.6
55.8
41.7
Major PPT
75.3
0.57
0.7
69.5
24.3
Minor 5ss
33.5
-1.9
3.2
44.4
43.5
Minor BPS
40.3
-0.7
1.9
48.4
41.3

Associated Gene:

Gene:
NABP1
Ensembl Gene ID:
ENSAPLG00000024306
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034526
3381335 - 3389344
8010