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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33913394_33916946_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33913394 - 33916946
Intron Length:
3553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTATCCCA
5'SS Class:
major
3'SS Sequence:
GTTTACTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTCTGTTTACTC
Flanking Amino Acid:
NNASSLPQGPG*
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.3
56.5
42.3
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
73
0.52
0.8
70.6
35.9
Minor 5ss
34.6
-1.8
2.8
41.4
44.5
Minor BPS
50
-0
2
65.01
41.9

Associated Gene:

Gene:
STAM2
Ensembl Gene ID:
ENSAPLG00000009755
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010175
33913389 - 33935367
21979