Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33917105_33917337_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

33917105 - 33917337

Intron Length:

233

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCATTT

5'SS Class:

weak_major

3'SS Sequence:

TGTTTCGTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTAGAT

U12 Branch Point Sequence:

TGTTTCGTTACA

Flanking Amino Acid:

AAQPAQAAYLSPGPDSVLNQ

Intron Amino Acid Position:

449

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.2

74.2

37.1

Major BPS

61.4

0.28

1.3

60.7

45.9

Major PPT

82.6

0.73

0.9

76.3

37.8

Minor 5ss

69.3

0.65

2.3

82.5

37.1

Minor BPS

0.02

2.3

71.5

40.4

Associated Gene:

Gene:

STAM2

Ensembl Gene ID:

ENSAPLG00000009755

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039298

33915845 - 33935367

19523

ENSAPLT00000010179

33916346 - 33935367

19022

ENSAPLT00000010175

33913389 - 33935367

21979