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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33920735_33921149_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33920735 - 33921149
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
AGGAAGGAAACT
Flanking Amino Acid:
TSDLSVEPEAATVDKNCVPE
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84
30.2
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
89
0.88
0.7
81.2
36.5
Minor 5ss
39.5
-1.2
2.8
48.7
47.5
Minor BPS
32.6
-1.2
2.5
48.51
44.1

Associated Gene:

Gene:
STAM2
Ensembl Gene ID:
ENSAPLG00000009755
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010175
33913389 - 33935367
21979
ENSAPLT00000039298
33915845 - 33935367
19523
ENSAPLT00000010179
33916346 - 33935367
19022