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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33922642_33922988_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33922642 - 33922988
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTAACTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CCTCTCCTAACT
Flanking Amino Acid:
KNKEDEDIAKAIELSLQEQK
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.9
80.8
27
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
69.2
0.43
0.8
63.2
31.7
Minor 5ss
39.8
-1.1
2.9
52
45.2
Minor BPS
57.8
0.32
1.7
73.51
43.3

Associated Gene:

Gene:
STAM2
Ensembl Gene ID:
ENSAPLG00000009755
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039298
33915845 - 33935367
19523
ENSAPLT00000010179
33916346 - 33935367
19022
ENSAPLT00000010175
33913389 - 33935367
21979