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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_33928724_33935327_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33928724 - 33935327
Intron Length:
6604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAGAG
5'SS Class:
major
3'SS Sequence:
GTTTTCGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATGCTTAATC
Flanking Amino Acid:
FAANPFEQDVEKATNEYNTS
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
62.1
38.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.8
0.74
0.9
76.3
37.8
Minor 5ss
23.9
-3
3
20.9
37.4
Minor BPS
71.1
0.64
1.7
79.12
36.5

Associated Gene:

Gene:
STAM2
Ensembl Gene ID:
ENSAPLG00000009755
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010175
33913389 - 33935367
21979
ENSAPLT00000039298
33915845 - 33935367
19523
ENSAPLT00000010179
33916346 - 33935367
19022