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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34042939_34043099_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34042939 - 34043099
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
GTCCTGAAAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
69.6
0.49
1
59.5
39
Major PPT
82.5
0.73
0.9
80.6
31.5
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
37.8
-0.8
2.3
54.07
41.9

Associated Gene:

Gene:
FMNL2
Ensembl Gene ID:
ENSAPLG00000009989
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025390
34040496 - 34053321
12826
ENSAPLT00000010458
34040496 - 34051203
10708