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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34046681_34051164_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34046681 - 34051164
Intron Length:
4484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACCCA
5'SS Class:
major
3'SS Sequence:
TTCCTCTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGTGCTCACGG
Flanking Amino Acid:
KDGAIEDIITDLRNQPYRRA
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
64.9
41.1
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
81.1
0.7
0.7
76.6
25.4
Minor 5ss
37.5
-1.4
3.1
48.7
47
Minor BPS
38.4
-1
2.3
42.53
48.6

Associated Gene:

Gene:
FMNL2
Ensembl Gene ID:
ENSAPLG00000009989
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025390
34040496 - 34053321
12826