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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34049861_34051164_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34049861 - 34051164
Intron Length:
1304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGTGCTCACGG
Flanking Amino Acid:
ITKFPNVHSRILETSRTDGP
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
82.5
37
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
81.1
0.7
0.7
76.6
25.4
Minor 5ss
37.8
-1.4
3.4
49.4
46.6
Minor BPS
38.4
-1
2.3
42.53
48.6

Associated Gene:

Gene:
FMNL2
Ensembl Gene ID:
ENSAPLG00000009989
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010458
34040496 - 34051203
10708