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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34059684_34059766_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34059684 - 34059766
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGCGT
5'SS Class:
major
3'SS Sequence:
TTTTTGTATCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTGTATCA
Flanking Amino Acid:
HHRKRSRSRSGSESEDDDSH
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
64.7
46.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
73.1
0.52
1.1
72.3
42
Minor 5ss
33
-1.9
3.4
48.4
47.2
Minor BPS
52.1
0.06
2.2
74.08
38.4

Associated Gene:

Gene:
PRPF40A
Ensembl Gene ID:
ENSAPLG00000010600
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048511
34056448 - 34076566
20119
ENSAPLT00000048044
34056448 - 34073176
16729
ENSAPLT00000011132
34056512 - 34076566
20055