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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34063757_34065271_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34063757 - 34065271
Intron Length:
1515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTGTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
CACCAGTAAATT
Flanking Amino Acid:
HEKMTSTTRYKKAEQMFGEM
Intron Amino Acid Position:
538

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
74.2
30.2
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
82.3
0.73
0.8
77.1
37.1
Minor 5ss
39.9
-1.1
3
49.1
41
Minor BPS
38.9
-0.7
2.3
50.87
43.5

Associated Gene:

Gene:
PRPF40A
Ensembl Gene ID:
ENSAPLG00000010600
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048511
34056448 - 34076566
20119
ENSAPLT00000048044
34056448 - 34073176
16729
ENSAPLT00000011132
34056512 - 34076566
20055