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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34065437_34066059_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34065437 - 34066059
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCTT
5'SS Class:
major
3'SS Sequence:
TTTTTATACAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATAC
Flanking Amino Acid:
MKMIINDPRYSALAKLSEKK
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
66.4
44.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70
0.45
1.1
72.1
36.4
Minor 5ss
35.7
-1.6
3.7
56.5
47.7
Minor BPS
55.2
0.14
1.7
66.59
39.5

Associated Gene:

Gene:
PRPF40A
Ensembl Gene ID:
ENSAPLG00000010600
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048511
34056448 - 34076566
20119
ENSAPLT00000048044
34056448 - 34073176
16729
ENSAPLT00000011132
34056512 - 34076566
20055