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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34066760_34067144_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34066760 - 34067144
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AAATGCTTAAAT
Flanking Amino Acid:
DDSSKQEGSADASSKKEDDD
Intron Amino Acid Position:
425

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
88.3
0.86
0.7
84.2
30.9
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
59.4
0.37
1.9
74.27
41.7

Associated Gene:

Gene:
PRPF40A
Ensembl Gene ID:
ENSAPLG00000010600
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011132
34056512 - 34076566
20055
ENSAPLT00000048511
34056448 - 34076566
20119
ENSAPLT00000048044
34056448 - 34073176
16729