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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34067950_34069235_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34067950 - 34069235
Intron Length:
1286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTATTTTGATT
Flanking Amino Acid:
AKPKELEDLEAMIKAEENST
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
77.6
33
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.4
0.71
0.7
74.1
31.1
Minor 5ss
40.4
-1.1
3.3
55.8
48.3
Minor BPS
62.3
0.47
1.2
75.52
35.3

Associated Gene:

Gene:
PRPF40A
Ensembl Gene ID:
ENSAPLG00000010600
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011132
34056512 - 34076566
20055
ENSAPLT00000048511
34056448 - 34076566
20119
ENSAPLT00000048044
34056448 - 34073176
16729