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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34069909_34070009_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34069909 - 34070009
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTATCTG
5'SS Class:
major
3'SS Sequence:
TCAAATTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TCATCATTAATG
Flanking Amino Acid:
SSVNEDHSKQKSTWTEHKSP
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.9
0.35
1.2
59.8
44.5
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
66.3
0.37
0.9
58
42.5
Minor 5ss
39.6
-1.2
2.8
50.3
46
Minor BPS
63.7
0.29
1.7
65.41
42.5

Associated Gene:

Gene:
PRPF40A
Ensembl Gene ID:
ENSAPLG00000010600
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048511
34056448 - 34076566
20119
ENSAPLT00000048044
34056448 - 34073176
16729
ENSAPLT00000011132
34056512 - 34076566
20055