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Intron Name: Anas_platyrhynchos_platyrhynchos_7_34070088_34071279_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34070088 - 34071279

Intron Length:

1192

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGAA

5'SS Class:

strong_major

3'SS Sequence:

GTTTCGCCCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAG

U12 Branch Point Sequence:

CTTTTCAGAGCT

Flanking Amino Acid:

QVGVTPPGTQTTHPVVCAAQ

Intron Amino Acid Position:

214

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

77.6

32.8

Major BPS

0.65

1.5

85.7

34.9

Major PPT

73.8

0.54

0.9

70.1

36.5

Minor 5ss

30.6

-2.2

3.4

39.4

46.5

Minor BPS

48.6

-0

73.51

43.1

Associated Gene:

Gene:

PRPF40A

Ensembl Gene ID:

ENSAPLG00000010600

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011132

34056512 - 34076566

20055

ENSAPLT00000048511

34056448 - 34076566

20119

ENSAPLT00000048044

34056448 - 34073176

16729