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Intron Name: Anas_platyrhynchos_platyrhynchos_7_34071303_34071513_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34071303 - 34071513

Intron Length:

211

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

CCTTTTTTGATT

Flanking Amino Acid:

PGVNSMDAQVGVTPPGTQTT

Intron Amino Acid Position:

206

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.15

0.6

96.2

11.9

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

100

1.12

0.4

100

Minor 5ss

39.3

-1.2

2.8

50.9

45.5

Minor BPS

64.3

0.53

1.2

73.17

Associated Gene:

Gene:

PRPF40A

Ensembl Gene ID:

ENSAPLG00000010600

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011132

34056512 - 34076566

20055

ENSAPLT00000048511

34056448 - 34076566

20119

ENSAPLT00000048044

34056448 - 34073176

16729