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Intron Name: Anas_platyrhynchos_platyrhynchos_7_34071545_34071971_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34071545 - 34071971

Intron Length:

427

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

ATTGTTTCTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTAAAT

U12 Branch Point Sequence:

TGGTGCTTAAAT

Flanking Amino Acid:

SQAAMQPTVPPGVNSMDAQV

Intron Amino Acid Position:

196

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.7

0.82

0.9

80.5

29.7

Major BPS

0.5

1.1

76.9

32.8

Major PPT

83.3

0.75

0.8

77.1

36.6

Minor 5ss

38.8

-1.3

2.9

49.9

46.4

Minor BPS

62.1

0.46

1.9

78.08

43.8

Associated Gene:

Gene:

PRPF40A

Ensembl Gene ID:

ENSAPLG00000010600

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011132

34056512 - 34076566

20055

ENSAPLT00000048511

34056448 - 34076566

20119

ENSAPLT00000048044

34056448 - 34073176

16729