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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34083644_34084362_F

Intron Information:

Intron Rank:
138340
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
34083644 - 34084362
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCTTT
5'SS Class:
weak_major
3'SS Sequence:
TCACTTTGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGATTCTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
73.3
38.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
72.5
0.51
0.9
69
36.8
Minor 5ss
70.8
0.7
2.2
82.3
37.4
Minor BPS
50.3
0.09
1.8
69.39
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024435
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036566
34083217 - 34086355
3139