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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34221585_34222246_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34221585 - 34222246
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGGAT
U12 Branch Point Sequence:
TTGTGTTTTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
71.3
35.7
Major BPS
51.9
0.05
1.4
51.7
43.9
Major PPT
85.5
0.8
0.9
79.9
37.7
Minor 5ss
26.6
-2.7
3
31.2
42.7
Minor BPS
54.2
0.13
2.1
70.62
41.9

Associated Gene:

Gene:
GALNT13
Ensembl Gene ID:
ENSAPLG00000011024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044796
34221504 - 34322129
100626