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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34223259_34252295_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34223259 - 34252295
Intron Length:
29037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
CTATCTTGTATT
Flanking Amino Acid:
KERSLLPALRAVISRNQEGP
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
82.3
0.73
0.9
73.7
40.5
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
49.9
0.07
1.8
69.07
42.5

Associated Gene:

Gene:
GALNT13
Ensembl Gene ID:
ENSAPLG00000011024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011496
34220081 - 34293536
73456
ENSAPLT00000045805
34220081 - 34322129
102049
ENSAPLT00000044796
34221504 - 34322129
100626
ENSAPLT00000032251
34213847 - 34286928
73082
ENSAPLT00000017350
34213847 - 34322129
108283