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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34252465_34268765_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34252465 - 34268765
Intron Length:
16301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TATGTGTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTGTATGT
Flanking Amino Acid:
NRSLPDVRLDGCKTKVYPDE
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
69.9
0.45
1.1
65.5
45.1
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
48.8
-0
2.4
79.06
43.7

Associated Gene:

Gene:
GALNT13
Ensembl Gene ID:
ENSAPLG00000011024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032251
34213847 - 34286928
73082
ENSAPLT00000017350
34213847 - 34322129
108283
ENSAPLT00000011496
34220081 - 34293536
73456
ENSAPLT00000045805
34220081 - 34322129
102049
ENSAPLT00000044796
34221504 - 34322129
100626