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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34268933_34269928_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34268933 - 34269928
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTATCTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAATT
Flanking Amino Acid:
IILVDDASEREFLKTSLENY
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
81.3
32.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.2
0.66
1
76.9
37
Minor 5ss
31.8
-2.1
3.6
48.2
47.9
Minor BPS
71.4
0.75
1.4
87.38
32.1

Associated Gene:

Gene:
GALNT13
Ensembl Gene ID:
ENSAPLG00000011024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044796
34221504 - 34322129
100626
ENSAPLT00000032251
34213847 - 34286928
73082
ENSAPLT00000017350
34213847 - 34322129
108283
ENSAPLT00000011496
34220081 - 34293536
73456
ENSAPLT00000045805
34220081 - 34322129
102049