About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34271227_34278997_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34271227 - 34278997
Intron Length:
7771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTCAACT
Flanking Amino Acid:
RRKGDRTLPVRTPTMAGGLF
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
69.5
0.44
1
64.4
41.7
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
68.7
0.66
1.5
83.42
38

Associated Gene:

Gene:
GALNT13
Ensembl Gene ID:
ENSAPLG00000011024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045805
34220081 - 34322129
102049
ENSAPLT00000044796
34221504 - 34322129
100626
ENSAPLT00000017350
34213847 - 34322129
108283
ENSAPLT00000011496
34220081 - 34293536
73456