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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34301449_34303608_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34301449 - 34303608
Intron Length:
2160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACAGAACG
Flanking Amino Acid:
IPRRYYSLGEIRNVDTNQCL
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
79
35.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
97
1.06
0.5
96.7
11.4
Minor 5ss
36.6
-1.5
3.3
51.4
45.5
Minor BPS
54.6
0.01
2
70.95
41.3

Associated Gene:

Gene:
GALNT13
Ensembl Gene ID:
ENSAPLG00000011024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045805
34220081 - 34322129
102049
ENSAPLT00000044796
34221504 - 34322129
100626
ENSAPLT00000017350
34213847 - 34322129
108283