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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34303708_34311660_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34303708 - 34311660
Intron Length:
7953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
GCTTTGTCACCT
Flanking Amino Acid:
FNCHGMGGNQVFSYTADKEI
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
74
36.4
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
91.8
0.94
0.6
84.7
30.2
Minor 5ss
32.2
-2
3
39.4
46.1
Minor BPS
43.6
-0.4
2.4
63.97
46.4

Associated Gene:

Gene:
GALNT13
Ensembl Gene ID:
ENSAPLG00000011024
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045805
34220081 - 34322129
102049
ENSAPLT00000044796
34221504 - 34322129
100626
ENSAPLT00000017350
34213847 - 34322129
108283